The Story Behind the Paper: Climate Change and Kelp Forest Food Webs

ResearchBlogging.orgYay! First paper of my postdoc is out in the August 2011 issue of Global Change Biology!

Woohoo!

So, what have I been doing for the past few years of my life?

In brief summary: Kelp. Food webs. Climate change. A potent combination.

And if you want the punchline without digging into the rest of this article, it is this: the diverse, complex food webs of southern California kelp forest will likely be greatly simplified if climate change leads to big storms every year.

I could give you all of the gory details of the paper, how I arrived at that conclusion, the science-y nuggets, etc. Instead, I thought I’d give you the slightly longer, more human, but more meander-y version of how this paper was created – the story of this particular story. It’s not something we always talk about in science. Science isn’t always a nice linear process. What we set out to do it not always what ends up happening. In the end, though, we want a nice linear story that leaves the juicy bits of exploration out. And the process behind this paper was, indeed, intellectually juicy.

So, how does a paper on kelp forests, food webs, and climate change, come to be?

Like all projects in my life, this was not one I was expecting to do. It’s kind of a theme for me. I came to work at the Santa Barbara Coastal Long-Term Ecological Research site to work on potential feedbacks between the diversity of life on the seafloor and grazing pressure by urchins. Essentially, I wanted to test a theoretical model that I’d put together with colleagues in a 2007 paper. I was convinced that feedbacks between diversity and function were going to be the next big thing. And I still think they’re pretty neat. The experiment was pretty fun, led me to revisit some old concepts in new ways, and ultimately produced some great data which is going to be submitted soon.

Five year running average of extreme (i.e., storm-driven) winter non-tidal residual wave heights from the San Francisco Tide Guage. Starting ~ 1945, we see an increase. Figure adapted from Bromirski et al. 2002 J. Climate.

But early on in all of this, the project PI called me to his office and laid out the following.

The SBC LTER has a buttload (metric, not Imperial) of data. They’ve been sampling thirty-five 80 m2 transects at reefs along the Santa Barbara Chanel coastline every summer for nearly a decade, counting the heck out of everything. At the same time, we’ve noticed two interesting things in the climate literature: 1) climate change projections say that the strongest storm of the winter should get bigger in the future, and 2) if you look at the data, the largest winter waves in California have gotten bigger over the last 50 years.

We know that big waves rip out kelp to life on the seafloor.

We don’t know what will happen if kelp is ripped out every year, or lost altogether.

The LTER had started a project to simulate this annual storm disturbance – big 200m2 plots where we went through and trimmed the giant kelp every winter with hedge clippers. But, coming up on year 2, no one had an idea of how to put the whole story together.

Hello, opportunity, how’s it going?

My facebook network. My mom is actually fairly well connected - but mostly to my High School cluster.

I’d long been fascinated with a network approach to studying communities. Basically, you can visualize life on the seafloor by thinking about Facebook. No, really! There are a ton of tools out there you can use to visualize your network of friends, with the links between them showing friendships, and you at the top. There’s a ton of information there. Who are the hubs? Who connects disparate groups of friends? How does the size of, say, your group of college friends influence the number of other random groups of friends you’ve accumulated through life?

And who has your mom friended, anyway?

OK, now, instead of friendship, think of your friends as eating each other. And you’re at the top!

OK, ok, now replace the people in your network with different species. And you’re a shark. Or giant squid. (or theoretical giant mutant Pycnopodia). Voilá! Food web! And all of that structure and complexity, it has real meaning describing the stability and function of a community of organisms. (well, ok, the function part is what I’m tackling in my current postdoc at nceas)

So, I went back to my PI and said, OK, hey, let’s take a look at how changing the annual frequency of storms can shift the network structure of kelp forest food webs. It would be an indirect effect, so we can use my favorite tool, Structural Equation Modeling, for the analysis. And we can even bring in two awesome other bits of data – transect-level wave height projections from the Coastal Data Information Program and awesome new measurements of kelp beds right after storm season taken by satellite (and developed by Kyle Cavanaugh – an awesome grad student at UCSB who uses Landsat images to count kelp).

He said, sure! But, I might want to see about that food web. You see, no one has actually put together a full kelp forest food web. Or even one for the 250 species that we sample. So, can this be done? Really?

And thus began a 6 month quest. Of living and dying by google scholar. Of talking to experts. Of driving up and down the coast to marine labs, riffling through their libraries of unpublished masters theses, or appendices to undergraduate student reports. Just to find out, who indeed, eats who?

It’s that kind of basic natural history that is necessary to inform sexy fun theory-based analyses. And without it, the sexy-fun-stats-nerdery is really meaningless.

I emerged with a nice solid web, a good sense of uncertainty, and a decent idea of how I’d put these models together. The next part was shockingly simple. Use plyr to smoosh our data with a master kelp-forest food web to get individual transect-level food webs (e.g., what the structure of a place with two seaweeds, an urchin, and a lobster, versus a full-blown hyper-diverse kelp forest)? And then use Structural Equation Modeling to fit models that looked like so:

Path diagram of an SEM showing how waves indirectly influence the species richness and linkage density of a kelp forest food web.

This is all very interesting, and one can contrast the strength of different indirect pathways by which waves influence kelp. It was not immediately intuitive, however, as to what this means for the future of kelp forests under a climate change scenario with annual large storms. Fortunately, as I was fitting Structural Equation Models, which are really just a system of linear equations, I could turn my models into dynamic simulations.

Yes yes. Lots of coding.

I then used these simulations to make predictions about how increasing the annual frequency of large storms will affect the network structure of kelp forest food webs. I could reproduce the table of results for you, and discuss each individual result, but I think the following image more or less sums it up

Basically, frequent large storms will simplify food webs in the end. What’s interesting, though, is that just one storm after years of calm – our current scenario – may actually increase complexity. Everything gets a little mixed up as sunlight streams in and lets suppressed algae establish a beachhead, even while top predators may decrease in diversity. And, shockingly, results from our large-scale field experiment – at least the first two years – appeared to match this pattern beautifully.

And thus, blammo! Publication!

Well, OK, no. Honestly, after the initial results it took a few meeting with my co-authors to get everyone on the same page. In no small part this was due to the atypical methods I was using. Also, while the final paper has about nine or ten different measures of community complexity in it, my initial analyses looked at about thirty. I had some winnowing to do in order to establish a good story. Good clear story is king. What is a scientific paper, after all, than good storytelling backed up by data and then confused with jargon.

After we all got on the same page (and I had tried my story out via a few talks and posters), I wrote it up for Science. Because, well, why not. Even so, it took multiple rounds of revision, before submission. And sweet sweet rejection. Thus followed attempts to submit to three different other journals (What? I wanted to try and be in one of the glossy magazines! I’m thinking’ about my career, here, and other postdocs will back me up on this!) And a major re-write for the format of each. Then, finally, I realized that GCB really was a logical and perfect fit for the piece, and the reviews I got were most helpful in clarifying the last few pieces.

In the end, I’m a pretty proud Papa on this one. I think it’s a nice solid piece of science. It’s got a massive chunk of natural history in it, filling what I see as a key gap. It uses some fancy-pants statistics – and allowed me to go on a deep statistical odyssey in learning the ins and outs of some arcane parts of SEM, such that I’m now an SEM package developer in R. And it coupled the analysis of a smokingly hot large-scale observational dataset (go-go LTER power!) with an intense and awesome mongo-effort field experiment (Clint, Shannon, and Christine, you guys are underwater animals!) It’s basically everything I want in a paper. And yet, it all coalesces around a single story:

The diverse, complex food webs of Southern California kelp forest will likely be greatly simplified if climate change leads to big storms every year.

BYRNES, J., REED, D., CARDINALE, B., CAVANAUGH, K., HOLBROOK, S., & SCHMITT, R. (2011). Climate-driven increases in storm frequency simplify kelp forest food webs Global Change Biology, 17 (8), 2513-2524 DOI: 10.1111/j.1365-2486.2011.02409.x

My Dissertation in Under 7 Minutes

ResearchBlogging.org
I recently attended the DISCCRS symposium for recent PhDs of a wide variety of disciplines whose work (past or present) deals with climate change. The week-long meeting was phenomenal, seeding me with thoughts, ideas, and basically making me feel quite good about the work I’m doing (if also very pessimistic about how society is dealing with Climate Change). Perhaps one of the most interesting exercises of the whole thing was something we had to do as a sort of getting-to-know-you. We had to present our dissertation in 7 minutes.

That’s right. 6 years of blood, sweat, and tears in 7 minutes. Oh, and for a totally non-specialist audience.

I thought this was an amazing challenge. Granted, I only ended up really presenting on 3 of my chapters (see papers below). But I really liked the results.

Apologies for the sound quality – the acoustics of the room were pretty bad. Props to The Urban Matador for some sound editing. And malaprops to me for not annunciating or projecting as much as I usually do. Bad scientist. Bad! Bad!

Also, please note that this is with a particular emphasis on how our work relates to climate change.



Byrnes, J., Reynolds, P., & Stachowicz, J. (2007). Invasions and Extinctions Reshape Coastal Marine Food Webs PLoS ONE, 2 (3) DOI: 10.1371/journal.pone.0000295

Byrnes, J., Stachowicz, J., Hultgren, K., Randall Hughes, A., Olyarnik, S., & Thornber, C. (2005). Predator diversity strengthens trophic cascades in kelp forests by modifying herbivore behaviour Ecology Letters, 9 (1), 61-71 DOI: 10.1111/j.1461-0248.2005.00842.x

Byrnes, J., & Stachowicz, J. (2009). The consequences of consumer diversity loss: different answers from different experimental designs Ecology, 90 (10), 2879-2888 DOI: 10.1890/08-1073.1

Our Future: Hot n’ Tasty?

Climate change. It’s going to wreak no small amount of havoc on mother nature (and if you’re reading this but think all of this climate change stuff is poppycock, please visit Skeptical Science and then come back). How good of a guide is our intuition for what will happen?

This is a great question when it comes to predator-prey relationships and the food chain. One may well think that, heck, from first principles we know that adding heat to a system speeds things up. So, you know, things should continue just as they are – just faster, and maybe with some range-limits and annual timing moved around a bit.

This is quite a sensible proposition. It’s also wrong.

Biomass of phytoplankton and zooplankton under different temperature regimes. Images from Wikipedia.

Recent work from Mary O’Connor and colleagues in PLoS Biology as well as Oliver Beveridge and colleagues in the Journal of Animal Ecology points out some intriguing and non-intuitive effects of heating up food webs – in two completely different systems no less.

O’Connor et al. examine the relationship between phytoplankton and their predators under nutrient enriched conditions. While the little green guys grow more quickly (per capita primary production goes up with increasing temperature), this doesn’t matter to voracious copepods. Their metabolism is sped up even faster, leading to more and more copepods and less and less phytoplankton at higher temperatures.

But what about layering a little complexity on top of that? Beveridge et al. look at a three-level food chain, with bacteria at the bottom, a protozoan consumer, and a ciliate top predator. They cross a manipulation of number of links in the food chain against an increase in temperature and let things run for 6 weeks. While cranking up the heat leads bacteria activity to pick up markedly (and even moreso when their consumer is around), temperature crossed with food chain length does some funny things.

Density of different organisms under conditions of differing food chain length and temperature. Note, if you like the knitted bacteria, you can find the patterns at loxosceles - http://loxosceles.org/crafty/bacterium.html.

Depending on the number of links in the food chain, the relationship between temperature and bacterial density is positive, negative, or U-shaped. In contrast, their consumer, Colpidium, increases where it’s warm when there are no predators, but markedly declines with temperature when it’s predator is around. It’s predator, Didinium, increases in density only at intermediate temperatures. Again, shifts in metabolism and predation rates throughout the food chain appears to be key.

Together, the two studies suggest a dynamic interplay between metabolic activity, rates of predation, and population dynamics. Different levels of a food chain can be affected in very different ways. The simple faster-herbivore-kill-kill scenario is sadly discredited. Rather, we need an understanding of how warming will affect different types of organisms’ rates of growth, death, and predation. Only then can we determine climate change’s dynamic impact on food webs.

O’Connor, M., Piehler, M., Leech, D., Anton, A., & Bruno, J. (2009). Warming and Resource Availability Shift Food Web Structure and Metabolism PLoS Biology, 7 (8) DOI: 10.1371/journal.pbio.1000178

Beveridge, O., Humphries, S., & Petchey, O. (2010). The interacting effects of temperature and food chain length on trophic abundance and ecosystem function Journal of Animal Ecology, 79 (3), 693-700 DOI: 10.1111/j.1365-2656.2010.01662.x