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i’m a chordata! urochordata!

January 20, 2010

The Conservation Horizon

Filed under: paper review — jebyrnes @ 4:07 pm

ResearchBlogging.orgEvery so often, a conservation problem rears its head that, upon reflection, we realize we had some inkling of even decades ago. Global warming, biofuels, overfishing, etc. The information was there, but scarce, buried in obscurity, or seemingly counterintuitive. Why not try and recognize the crucial questions early, before the lobster is out of the trap, so to speak? (What, I’m a marine biologist!)

Businesses has recognized the need to spot emerging trends with scant information and regularly engages in an exercise called Horizon Scanning. Recently, a group led by William Sutherland decided to appropriate the approach for conservations issues in 2010. With a panel of academics, horizon scanning experts, and representatives of various organizations they identified 61 possible issues and then through voting, discussion, and evaluation winnowed the list down to 15 issues which are of potentially great import, but we don’t have a ton of information on.

Below I have listed the 15 with a little information. I also couldn’t resist, and have included a little color coding. – Red means something that we are fairly certain can and will be problematic, and needs more research now. – Yellow means something that either has mixed positive and negative aspects, and hence needs more exploration before it is adapted more widely, or we just don’t know enough about this issue. – Green are developments that seem largely positive, although we have yet to quite grasp their full implications.

  • Microplastic Pollution – Where is all of our plastic waste going? In the oceans, the SEAPLEX project is paving the way forward on this. But across the land, where is the plastic going? What happens as degraded plastics get incorporated into out soils?
  • Nanosilver in wastewater: In general, we have no ideas what nanomaterials do once released into the environment. Fortunately, there’s a huge research initiative beginning to address this.
  • Synthetic meat: Solve world hunger! Allow even vegetarians to eat meat! While this is synthetic meat is expensive now, look for the price to come down. PETA has even announced a $1 million prize for the first marketed in vitro meat.
  • Artificial life: This isn’t a-life in terms of simulations on your computer, but rather, starting with basic building blocks, and building a totally new from scratch. Very cool. Imagine custom-designed vaccine or fuel making organisms. But the potential for unanticipated results (I mean, heck, we don’t even entirely understand how all of the machinery of DNA works yet) or misuse is enormous.
  • Stratospheric aerosols: Proposed as a possible counter-force against global warming, sure, it’ll cut-down on insolation. However, putting things in the sky will not solve our CO2 problem and its related issues, such as acidification. Add to that potential issues for plant photosynthesis and acidic rain or other consequences or particular matter in the atmosphere, and you have giant blinking caution light.
  • Biochar: A process of burning plant material without oxygen, biochar creates solid carbon that can then be buried in soils, permanently sequestering carbon. As a bonus, some of the byproducts are great at generating energy. However, this only works if it is widespread across the globe. But, what will the consequences of adding so much locked up carbon to soils around the globe? This radical rebalancing of C:N ratios could have large and unanticipated consequences for plant diversity and productivity, particularly if this is rolled out globally without proper research in its impact.
  • Mobile sensing technology: With the advent of cellular networks tapped into los internets coupled with real-time image and data-processing, we can deploy all sorts of autonomous sensors around the globe and get data. Cameras, microphones, light-probes, temperature-probes – the list is endless, and the data that can be acquired is stunning. And this is to say nothing of citizen-science efforts that use texting to report sightings of animals or recreational fishing catch.
  • Deoxygenation of the oceans: While hypoxic zones in the ocean have always been with us, the increase in the size and duration of these zones has been quite troubling. Why, where, and when these zones form is a key question, particularly as many models predict warming will promote their formation, size, and duration.
  • Changes in denitrifying bacteria: I had not previously heard of this, but it makes sense. Nitrogen in ocean sediments is turned into inert N2 by bacteria. However, in some estuaries, declines in primary productivity, and hence the organic detritus, have caused a switch from denitrification to nitrogen fixation. This means that rather than absorbing excess nitrogen, these estuaries become a net exporter of nitrogen into the surrounding waters. Another biogeochemical cycle run amok. But how widespread this phenomena is, whether its impacts are local or global, and more remain unknown at present.
  • High-latitude volcanism: Guess what is under those receding ice sheets? You guessed it! Volcanos! Volcanos whose eruptions have, until now, been contained. This is already causing problems in Iceland. How many volcanos there are? How bad are they? What will they do to the atmosphere? Good questions all!
  • The invasion of lionfish in the Caribbean: Lionfish are pretty. They’re also highly invasive, and have spread all the way from Rhode Island to Columbia. They’re voracious predators, and their long-term impact on the already impacted Caribbean reef system is only just being understood. This one seemed a little specific compared to the other issues, but, I can see how the impact could be large.
  • Trans-arctic dispersal: As the Arctic sea-ice melts and opens up the fabled Northwest Passage, they also open up a road for a new transarctic interchange of biota. Not only this, but rapid shipping across the passage will further facilitate homogenization across both the Atlantic and Pacific sides of the Arctic.
  • Assisted colonisation: This is basically the movement of species to areas not current in their range by humans. There are a lot of good intentions behind this idea – to keep a species’ distribution moving faster than a shift in its habitat due to climate change, to restore lost ecological function provided by a sister taxa (see Pleistocene rewilding), or to transplant a species out of a place where it will otherwise be driven extinct. As with any invasive species problem, though, the potential unintended consequences are enormous, and cannot always be adequately discovered with pre-transplant research.
  • Impact of reduced deforestation on non-forested ecosystems: There are a number of efforts going on to reduce the clearing of tropical rainforests. While on its face, this is wonderful, there are some unintended consequences. First, in the 2 years until some restrictions cut in, many countries may accelerate the pace of destruction. Second, eliminating deforestation does not eliminate the demand for land. Efforts to clear rainforests may be shifted to other habitats, some of which may actually be more effective carbon sinks.
  • Large-scale international land acquisition: I also found this one rather curious. To shore up their food supply, many nations are buying vast swaths of land in developing countries. This has the benefit of providing work in those nations, as well as a more consistent food supply. It may also lead to more easily enforced environmental regulations if there are only a few major landholders However, it has the cost of turning sometimes natural lands into agriculture. It may also reduce access and ownership by local peoples (colonialism round 2?) causing some intense conflicts in the face of local environmental catastrophes.

All in all, an intriguing list. Given that it’s conservation concerns, it’s not too surprising that much of this list is somewhat disheartening. But, there is a ton of fodder for new research here. This is not to mention the benefits of thinking about and taking action on these issues NOW, before many of them become part of the global status quo.

Sutherland, W., Clout, M., Côté, I., Daszak, P., Depledge, M., Fellman, L., Fleishman, E., Garthwaite, R., Gibbons, D., & De Lurio, J. (2010). A horizon scan of global conservation issues for 2010 Trends in Ecology & Evolution, 25 (1), 1-7 DOI: 10.1016/j.tree.2009.10.003

Research Blogging Awards!

Filed under: blog, neat! — Tags: — jebyrnes @ 10:36 am

Research Blogging Awards 2010 Well, everyone’s had a great year blogging away about the peer reviewed literature, yes? It’s time to reward those efforts! Announcing the first annual Research Blogging Awards! There are a multitude of categories, each with a $50 cash prize attached. And, here’s the kicker, the best research blog of the year will win $1,000! And with the upcoming iTablet, iPad, iSlate, iWillCallItWhatIWant tech-shininess from Apple just around the corner, it’s not a moment too soon!

So head on over and nominate away!

January 6, 2010

Ecology in 2020?

Filed under: Uncategorized — jebyrnes @ 11:09 am

Today’s issue of Nature rings in the New Decade with an interesting article on where Science needs to be in 2020. With respect to Ecology, Robert Holt makes the following observation:

A key task will be to predict and mitigate this loss of biodiversity and the degradation of ecosystem function. One step is to gauge the resilience of ecological networks such as food webs — in particular, their capacity to withstand disturbance and species loss. This will require insights from many disciplines. Stable isotope analysis and genetic bar-coding should provide a clearer picture of who eats whom in a community.

Um. I think that describes my research program. Except the whole isotope/bar-coding thing. Damn. Add that to the list of things I need to learn, as right now, figuring out who-eats-who can be a real show-stopper! But overall, I guess I’m on the right track. Ha!

December 1, 2009

Tunicates on Bizarre Foods!

Filed under: ascidians, tunicate culinary adventures — Tags: — jebyrnes @ 11:35 am

At last, Halocynthia roretzi has made it to the Food Network! Scroll to 3:40 for the good stuff.



“Yummy is not the word I would use to describe this…” Uh oh.

November 6, 2009

CSAs for the Sea

Filed under: neat! — Tags: — jebyrnes @ 2:19 pm

Here at the Santa Barbara Farmer’s market, I’ve been delighted that we have local fish, ridgeback shrimp, mussels, and oysters. They’re amongst the tastiest seafood I’ve eaten (last week’s pumpkin shrimp risotto that I whipped up was one of the all time most amazing things I’ve ever cooked).

One thing I’ve always admired is that the lovely fresh seasonal sustainably farmed veggies one can get at the farmers market can also be purchased via a Community Supported Agriculture organization. CSA’s are awesome, in that a farm offers “shares” to the public. The subscribers pay up front for, say, a box of vegetables that they pick up weekly, hence giving them cash up front so that they can plan their season. This promotes good (and seasonal) eating on the part of consumers, good farming practices on the part of farmers (many CSAs are organic, etc, given the type of consumer that goes for these sorts of efforts), and fosters a nice sense of community between farmer and consumer.

Intriguingly, the model for veggies has caught on for meat, so that in many places you can now get a “meat share” from places like the Sonoma County Meat Buying Club.

So with all of this promotion for sustainable, quality, communal food buying from terrestrial sources, I’ve long wondered – why are there not CSA’s for the sea? Why not pool a bunch of consumers who get their weekly fish, so that they can subsidize the costs of fishing, provide support through good and bad years. Most importantly, this would tie people more closely to the fishing policies that happen right off their coast, giving them a reason to understand and financially address important marine policy issues, and promoting better stewardship of this precious resource. So rather than a CSA, what about a CSF (community supported fishery), if you will.

Well, it looks like it has happened! The Port Clyde Fresh Catch seafood cooperative has worked in collaboration with the Island Institute, the Nature Conservancy, and the Penobscot East Resource Center to set up a CSF provides weekly fish shares, in addition to settling at local farmer’s markets. The offer a variety of fish and shrimp CSF options. And being a modern organization, they even have a facebook page.

Fortunately, this doesn’t appear to be an isolated phenomenon. Around Boston, the Cape Ann Fresh Catch started up last summer (there was even an article in the Wall Street Journal). Intriguingly, they also take a very long careful and nuanced look at what it means to say that their actions are sustainable. And, of course, they have a facebook page.

There’s also a CSF in North Carolina called Walking Fish (also on facebook – sheesh!) They’ve recently been nominated for a sustainability award. And Skipper Otto’s in Vancouver (obligatory fb link).

What a great model. I hope it catches on here in California, and paves a way for future local sustainable fishing policy by really coupling local communities to the seas around them.

Update: The Northwest Atlantic Marine Alliance actually maintains a list of all CSFs in the US.

October 16, 2009

Help Kids Learn Sea Chanties!

Filed under: blog — Tags: , — jebyrnes @ 8:57 am

As a young tyke growing up around the decaying maritime glories of Baltimore, I was lucky to sail aboard The Lady Maryland. The feel and scent of her wooden decks, polished brass, and wet wool still haunt me, actually. Those voyages were coupled with a feisty choir teacher, John “Doc” Merrill, who taught me my first few Sea Chanties. (and we all know where that led…)

While I loved the marine world from a deeply emotional place at the time (my Aunt had been an underwater photographer before passing away), and loved science because, let’s face it, I was an enormous nerd, Tall Ships and Sea Chanties are what made me fall in love with The Sea. The lore, legend, history, and traditions that surround all maritime endeavors are a big part of understanding man’s interactions with the marine world. And there is a lot that is rich and satisfying to be discovered.

So, to give other kids this opportunity to meet a bit of their Seafaring heritage, I’d urge you all to donate to Ahoy Mate! Student Explorer! over at DonorsChoose.org. This is part of the Oceans in the Classroom Initiative setup by Kevin Z and a rogue’s gallery of other ocean bloggers. The project would send fourth and fifth graders from a high poverty school to visit the National Maritime Museum in San Franciso, and spend the night on the Balclutha, a ship that I’ve spent many nights chantying on.

So go check it out, or, if you would like to donate to another marine project, see the DSN Oceans in the Classroom Initiative list of projects and donate!

October 14, 2009

Who’s your (academic) (great-grand) Daddy?!

Filed under: neat!, silly — jebyrnes @ 8:46 am

Science is a giant family. Each Professor gives “birth” to a litter of PhD students over time, many of whom go on to have their own students, who have their own students, and so on and so forth ad infinitum.

While all of us know our academic parent (right?), at least some of our sciblings (depending on the age of the lab), and usually our academic grandparent, what about our great-grandparent? Or great-great-grandparent. Can my aacadmic lineage be traced back to Darwin? Or Linneaus? Indeed, something like 40% of mathematicians can indeed trace themselves back to Leibniz.

Not it’s time for Marine Ecologists to do the same.

Mary O’Connor has graciously setup a Marine Ecology Family Tree over at the wonderful academictree.org. The site endeavours to see how all academic geneologies end up connecting. Is your discipline not there? Contact the admins. But if you’re a marine ecologist, go there now, login, and fill in your info! Let’s see how many degrees we’re separated by!

(also, as more info is filled in, I’ll update my tree on the right)

September 22, 2009

Lawrence Slobodkin: Trophic Pioneer

Filed under: science! — Tags: , , — jebyrnes @ 12:49 pm

I just learned that Lawrence Slobodkin passed away last week. Slobodkin was one of the authors of the infamous HSS paper in 1960 that has shaped how we think of the role of predators in ecosystems for decades. Indeed, it is one of the very origins of the modern concept of trophic cascades. More than that, though, this was a man with broad ranging interests in biology. I think the New York Times Obit has some interesting points about his contribution to our understanding of the world, and includes this quote from Slobodkin:

Sometimes I chose research problems for their presumed importance, but often I was attracted by their beauty. My research and that of most of my friends is not a story of triumph but rather of fascination by nature.

A good model for us all.

September 18, 2009

Web-Based Multilevel Modeling

Filed under: R, neat!, statistics — jebyrnes @ 9:43 am

This is tremendously cool. A nice intuitive web-based interface for the lme4 package in R (and you neither need to know R or understand the intricacies of the lme4 package) that gives you pdf output and plots. If you just want to play around and not worry about coding things up, it’s a great little option. Be sure to check out the demo video.

September 10, 2009

Sea Stars on Acid

Filed under: paper review — Tags: , — jebyrnes @ 10:50 am

ResearchBlogging.org

As an ecologist working in temperate climes, I’ve been following the ocean acidification field with some interest. It’s always been obvious to me how acidification has enormous ramifications for coral reefs and other tropical marine ecosystems. They exist in warm waters already, often close to their thermal maxima. Acidifying the water around them at any creatures using calcium carbonate seems like a recipe for disaster.

How not to do acidification research on Pacific salmon.  Photo from <a href='http://www.simpledailyrecipes.com'>simple daily recipes</a>.

How not to do acidification research on Pacific salmon. Photo from simple daily recipes.

But what about up north in colder climes? There, what is the relative importance of acidification versus changes in temperature? Do changes in physiological rates due to warming compensate for costs of acidification due to CO2 increase? This is particularly interesting along the Pacific Coast of North America, as in many regions, upwelling already drives annual fluctuations in pH – sometimes to levels not predicted to be widespread until 2050 (Feeley et al 2005 Science).

The recent paper by Gooding, Harley, and Tang in PNAS puts an interesting spin on this. Their work shows that, under scenarios where both temperature and CO2 increase, the feeding and growth rates of sea stars actually increases.

Sadly, some folk in the non-science world seem to be taking this as evidence that either global warming is a lie, or will make the world a shiny happier place. The real answer is far from it.

The truth lies in the fact that the sea stars used here don’t have a ton of calcified body parts. Indeed, they may just be compensating with more wet tissue mass, although this currently remains unclear.

With respect to organisms that rely on calcified skeletons (e.g., sea urchins) we know that their larvae floating about in the ocean will react more poorly than expected to increased heat stress if they grow up in a high CO2 world (O’Donnell, Hammond, and Hoffman 2009 Marine Biology). And if hard-bodied prey (i.e. mussels) react more poorly to acidification than they gain from increased physiological rates due to heightened temperature, things get tricky. The particular sea star studied here, Pisaster ochraceus, for example, is already a voracious consumer of hard bodied prey. If it gets a boost while it’s prey is weakened, the consequences could be quite large.

The future of the intertidal?  Image modified from <a href='http://www.marinebio.net/marinescience/03ecology/tpmid.htm'>marinebio.net</a>.

The future of the intertidal? Image modified from marinebio.net.

I do wonder if there is hope, though. If in some regions there are already regular pulses of acidified waters, one would guess that organisms possess some machinery for dealing with this annual event. While they may not possess adaptations that allow them to deal with long-term acidification – not yet – perhaps these may serve as Gould’s Spandrels. While on average calcifying organisms may not perform well underacidified conditions – even with a boost from temperature – one wonders if the raw genetic variation is out there waiting to be tapped. A hopeful thought for some grim research.

Gooding, R., Harley, C., & Tang, E. (2009). Elevated water temperature and carbon dioxide concentration increase the growth of a keystone echinoderm Proceedings of the National Academy of Sciences, 106 (23), 9316-9321 DOI: 10.1073/pnas.0811143106

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